Abstract/Details

Inducible RNA interference in <i>Aspergillus nidulans</i>


2009 2009

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Abstract (summary)

Scope and Method of Study. A unique RNAi construct was tested with the developmental gene, brlAβ, in the fungal genetic model, Aspergillus nidulans. The construct contains inverted repeats of the inducible alcohol dehydrogenase (alcA) promoter surrounding a unique BamHI restriction enzyme site containing any gene of interest. The RNAi construct was utilized to generate a genome-wide RNAi library. The RNAi library was used here to screen for fludioxonil resistance. There is evidence that fludioxonil, a commonly used fungicide, activates an osmotic stress-signaling pathway. When it is aberrantly activated, the cells swell beyond capacity, leak their contents, and die. Ambruticin is an antifungal that could potentially be used in humans and animals to treat fungal infections, and it is also thought to aberrantly activate the osmotic stress-signaling pathway. The RNAi library strains resistant to fludioxonil were tested against ambruticin VS3 and sensitivity to osmotic stress. The silenced insert from selected strains was rescued from the genome by PCR of the integrated RNAi construct and sequenced to identify the silenced gene. Those genes that were identified more than one time were further analyzed in silico, and selected genes were chosen to independently confirm resistance conferred by silencing.

Findings and Conclusions. The RNAi construct was found to integrate into the genome of the fungus and cause locus specific silencing of brlAβ in Aspergillus nidulans. The RNAi strains had inducible brlA phenotypes, and downregulation of brlA was confirmed by Northern blotting and Real-Time Reverse-Transcriptase PCR. The downregulation of brlA was found to be induced by RNAi with anti-sense Northern blots and siRNA Northern blots, and the silencing was specific for brlAβ, not brlAα, a downstream alternate transcript of the brlA locus.

Thirty-six genes were found more than one time to cause resistance to fludioxonil and ambruticin when silenced. Twenty-four of these had annotations, while twelve were hypothetical. Twenty-one out of the twenty-four annotated genes contain transmembrane domains, indicating that fludioxonil and ambruticin alter the plasma membrane in order to aberrantly activate the osmotic stress-signaling pathway. It also suggests there are multiple ways the drugs act upon the cell, rather that having a single target.

Indexing (details)


Subject
Genetics;
Cellular biology;
Microbiology
Classification
0369: Genetics
0379: Cellular biology
0410: Microbiology
Identifier / keyword
Biological sciences; Ambruticin; Aspergillus nidulans; Fludioxonil; Fungicides; Osmotic stress; RNA interference; brlA development
Title
Inducible RNA interference in <i>Aspergillus nidulans</i>
Author
Barton, Lisa Michelle
Number of pages
96
Publication year
2009
Degree date
2009
School code
0664
Source
DAI-B 70/09, Dissertation Abstracts International
Place of publication
Ann Arbor
Country of publication
United States
ISBN
9781109347524
Advisor
Prade, Rolf A.
Committee member
Ayoubi, Patricia; Hadwiger, Jeff; Marek, Steve; Shaw, Ed
University/institution
Oklahoma State University
Department
Microbiology, Cell, & Molecular Biology
University location
United States -- Oklahoma
Degree
Ph.D.
Source type
Dissertations & Theses
Language
English
Document type
Dissertation/Thesis
Dissertation/thesis number
3372156
ProQuest document ID
305083694
Copyright
Database copyright ProQuest LLC; ProQuest does not claim copyright in the individual underlying works.
Document URL
http://search.proquest.com/docview/305083694
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